Data
From ToxBank API Wiki
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Datasets
Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.
Dataset format / examples
- OpenTox_API_1.2_Dataset +
- modified OT datasets to include BioEntities
- other types of datasets
All identified by URIs
Software
- BioInvestigationIndex web application
- SIMBioMS
- SyMBA
- SysMO-DB
- XperimentR : Built around ISA, has a notion of a Protocol and Application of a protocol to a Study
- BASE
Standards
Ontology repositories
- EBI Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup; publications: doi:10.1186/1471-2105-7-97, doi: 10.1093/nar/gkn252
- NCBO BioPortal http://bioportal.bioontology.org/; publications: doi: 10.1093/nar/gkp440