Data
From ToxBank API Wiki
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#[http://biosharing.org/standards Biosharing.org] | #[http://biosharing.org/standards Biosharing.org] | ||
#[http://www.cdisc.org/ CDISC] | #[http://www.cdisc.org/ CDISC] | ||
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+ | == Ontology repositories == | ||
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+ | #EBI Ontology Lookup Service [http://www.ebi.ac.uk/ontology-lookup http://www.ebi.ac.uk/ontology-lookup] | ||
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+ | Publications: [http://dx.crossref.org/10.1186%2F1471-2105-7-97 doi:10.1186/1471-2105-7-97], [http://dx.crossref.org/10.1093/nar/gkn252 doi: 10.1093/nar/gkn252] | ||
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+ | #NCBO BioPortal [http://bioportal.bioontology.org/ http://bioportal.bioontology.org/] | ||
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+ | Publications: [http://dx.crossref.org/10.1093/nar/gkp440 doi: 10.1093/nar/gkp440] |
Revision as of 14:26, 20 October 2011
Data |
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Contents |
Datasets
Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.
Dataset format / examples
- OpenTox_API_1.2_Dataset +
- modified OT datasets to include BioEntities
- other types of datasets
All identified by URIs
Software
- BioInvestigationIndex web application
- SIMBioMS
- SyMBA
- SysMO-DB
- XperimentR
- Built around ISA, has a notion of a Protocol and Application of a protocol to a Study
Standards
Ontology repositories
- EBI Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup
Publications: doi:10.1186/1471-2105-7-97, doi: 10.1093/nar/gkn252
- NCBO BioPortal http://bioportal.bioontology.org/
Publications: doi: 10.1093/nar/gkp440