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From ToxBank API Wiki
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== Ontology repositories == | == Ontology repositories == | ||
− | #EBI Ontology Lookup Service [http://www.ebi.ac.uk/ontology-lookup http://www.ebi.ac.uk/ontology-lookup] | + | #EBI Ontology Lookup Service [http://www.ebi.ac.uk/ontology-lookup http://www.ebi.ac.uk/ontology-lookup]; publications: [http://dx.crossref.org/10.1186%2F1471-2105-7-97 doi:10.1186/1471-2105-7-97], [http://dx.crossref.org/10.1093/nar/gkn252 doi: 10.1093/nar/gkn252] |
− | + | #NCBO BioPortal [http://bioportal.bioontology.org/ http://bioportal.bioontology.org/]; publications: [http://dx.crossref.org/10.1093/nar/gkp440 doi: 10.1093/nar/gkp440] | |
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− | #NCBO BioPortal [http://bioportal.bioontology.org/ http://bioportal.bioontology.org/] | + | |
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Revision as of 14:32, 20 October 2011
Data |
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Contents |
Datasets
Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.
Dataset format / examples
- OpenTox_API_1.2_Dataset +
- modified OT datasets to include BioEntities
- other types of datasets
All identified by URIs
Software
- BioInvestigationIndex web application
- SIMBioMS
- SyMBA
- SysMO-DB
- XperimentR
- Built around ISA, has a notion of a Protocol and Application of a protocol to a Study
Standards
Ontology repositories
- EBI Ontology Lookup Service http://www.ebi.ac.uk/ontology-lookup; publications: doi:10.1186/1471-2105-7-97, doi: 10.1093/nar/gkn252
- NCBO BioPortal http://bioportal.bioontology.org/; publications: doi: 10.1093/nar/gkp440