Data

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## [http://bioassayontology.org/index.php?option=com_content&view=article&id=96&Itemid=137 BioAssay ontology]
 
## [http://bioassayontology.org/index.php?option=com_content&view=article&id=96&Itemid=137 BioAssay ontology]
 
### [http://www.bioassayontology.org/index.php?option=com_content&view=article&id=97&Itemid=140 Assay Annotation Template]
 
### [http://www.bioassayontology.org/index.php?option=com_content&view=article&id=97&Itemid=140 Assay Annotation Template]
 +
##[http://www.nthanalytics.com/doc/Study%20Data%20Tabulation%20Model%20v1%202%20Draft%2020070710.pdf Study Data Tabulation model]
 
All identified by URIs
 
All identified by URIs
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== Software ==
 
== Software ==

Revision as of 11:33, 20 October 2011

Data


Contents

Datasets

Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.

Dataset format / examples

  1. OpenTox_API_1.2_Dataset +
  2. modified OT datasets to include BioEntities
  3. other types of datasets
    1. [ISA-TAB]
      1. ISA Configurator
    2. TG-GATES .cel files
      1. Acetaminophen
      2. Amiodarone
      3. Chlorpromazine
    3. BioAssay ontology
      1. Assay Annotation Template
    4. Study Data Tabulation model

All identified by URIs

Software

  1. BioInvestigationIndex web application
    1. NERC Environmental Bioinformatics data center
    2. Harvard Stem cell discovery engine
    3. EBI BioInvestigation Index
  2. SIMBioMS
  3. SyMBA
  4. SysMO-DB
  5. XperimentR
    1. Built around ISA, has a notion of a Protocol and Application of a protocol to a Study


Standards

  1. Biosharing.org
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