Data
From ToxBank API Wiki
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# [https://github.com/ISA-tools/BioInvIndex BioInvestigationIndex web application] | # [https://github.com/ISA-tools/BioInvIndex BioInvestigationIndex web application] | ||
## [http://bii.nwl.ac.uk/bioinvindex NERC Environmental Bioinformatics data center] | ## [http://bii.nwl.ac.uk/bioinvindex NERC Environmental Bioinformatics data center] | ||
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#[http://simbioms.org SIMBioMS] | #[http://simbioms.org SIMBioMS] | ||
#[http://symba.sourceforge.net/ SyMBA] | #[http://symba.sourceforge.net/ SyMBA] | ||
| + | #[http://www.sysmo-db.org/ SysMO-DB] | ||
| + | #[http://www3.imperial.ac.uk/bioinfsupport/resources/data_management/xperimentr XperimentR] | ||
| + | ## Built around ISA, has a notion of a Protocol and Application of a protocol to a Study | ||
Revision as of 08:34, 20 October 2011
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Datasets
Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.
Dataset format / examples
- OpenTox_API_1.2_Dataset +
- modified OT datasets to include BioEntities
- other types of datasets
- [ISA-TAB]
- TG-GATES .cel files
- BioAssay ontology
All identified by URIs
Software
- BioInvestigationIndex web application
- SIMBioMS
- SyMBA
- SysMO-DB
- XperimentR
- Built around ISA, has a notion of a Protocol and Application of a protocol to a Study
