Data

From ToxBank API Wiki
(Difference between revisions)
Jump to: navigation, search
m (Datasets)
m (Open source software)
Line 29: Line 29:
 
## [http://www.ebi.ac.uk/bioinvindex/ EBI BioInvestigation Index]
 
## [http://www.ebi.ac.uk/bioinvindex/ EBI BioInvestigation Index]
 
#[http://simbioms.org SIMBioMS]
 
#[http://simbioms.org SIMBioMS]
 +
#[http://symba.sourceforge.net/ SyMBA]

Revision as of 08:14, 20 October 2011

Data


Datasets

Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.

Dataset format / examples

  1. OpenTox_API_1.2_Dataset +
  2. modified OT datasets to include BioEntities
  3. other types of datasets
    1. [ISA-TAB]
      1. ISA Configurator
    2. TG-GATES .cel files
      1. Acetaminophen
      2. Amiodarone
      3. Chlorpromazine
    3. BioAssay ontology
      1. Assay Annotation Template

All identified by URIs


Open source software

  1. BioInvestigationIndex web application
    1. NERC Environmental Bioinformatics data center
    2. Harvard Stem cell discovery engine
    3. EBI BioInvestigation Index
  2. SIMBioMS
  3. SyMBA
Personal tools