Data

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## [[http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf ISA-TAB]]
 
## [[http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf ISA-TAB]]
 
### [http://isatab.sourceforge.net/isaconfig.html ISA Configurator]
 
### [http://isatab.sourceforge.net/isaconfig.html ISA Configurator]
 +
### [[https://github.com/ISA-tools/BioInvIndex BioInvestigationIndex web application]
 +
#### [http://bii.nwl.ac.uk/bioinvindex NERC Environmental Bioinformatics data center]
 +
#### [http://discovery.hsci.harvard.edu/bioinvindex/ Harvard Stem cell discovery engine]
 +
#### [http://www.ebi.ac.uk/bioinvindex/ EBI BioInvestigation Index]
 +
#### []
 
## TG-GATES .cel files
 
## TG-GATES .cel files
 
### [http://toxico.nibio.go.jp/open-tggates/compound_search/screen3/compound?compound_id=00001&design_name=HG-U133_Plus_2&organ_id=ORGA0010&test_type=in+vitro Acetaminophen]
 
### [http://toxico.nibio.go.jp/open-tggates/compound_search/screen3/compound?compound_id=00001&design_name=HG-U133_Plus_2&organ_id=ORGA0010&test_type=in+vitro Acetaminophen]

Revision as of 07:46, 20 October 2011

Data


Datasets

Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.

TBD

  1. OpenTox_API_1.2_Dataset +
  2. modified OT datasets to include BioEntities
  3. other types of datasets
    1. [ISA-TAB]
      1. ISA Configurator
      2. [BioInvestigationIndex web application
        1. NERC Environmental Bioinformatics data center
        2. Harvard Stem cell discovery engine
        3. EBI BioInvestigation Index
        4. []
    2. TG-GATES .cel files
      1. Acetaminophen
      2. Amiodarone
      3. Chlorpromazine
    3. BioAssay ontology
      1. Assay Annotation Template

All identified by URIs

Retrieved from "http://api.toxbank.net/index.php/Data"
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