API Investigation:Sparql

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(update parameters and example for relational parameter in bio materials search (investigation_by_gene_and_value))
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* geneIdentifiers: Array of Strings for investigation_by_genes (e.G.: uniprot:P10809,genesymbol:HSPD1,unigene:Hs.595053,refseq:NM_002156,entrez:3329)
 
* geneIdentifiers: Array of Strings for investigation_by_genes (e.G.: uniprot:P10809,genesymbol:HSPD1,unigene:Hs.595053,refseq:NM_002156,entrez:3329)
 
* value: String for investigation_by_characteristic_name, investigation_by_characteristic_value, investigation_by_characteristic and investigation_by_factor
 
* value: String for investigation_by_characteristic_name, investigation_by_characteristic_value, investigation_by_characteristic and investigation_by_factor
 +
* relOperator: String for investigation_by_gene_and_value. Relational operator for pvalue, qvalue, FC. One of <below, above>.
 
|REST_header_param=Accept: application/json, subjectid:SECURITY-TOKEN
 
|REST_header_param=Accept: application/json, subjectid:SECURITY-TOKEN
 
|REST_op_result=Investigation data as json
 
|REST_op_result=Investigation data as json
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  curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
 
  curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
 +
 +
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" -d "relOperator=above" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
  
 
  curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value
 
  curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value

Revision as of 10:12, 11 December 2014

Description Get information from investigations
Resource Investigation
Method GET
URI investigation/sparql/{template_name}
Parameters params per template(template_name):
  • no params needed for investigation_and_characteristics, investigations_and_factors and investigations_and_protocols
  • factorValues: URI array for investigation_by_factors and protocols_by_factors template
  • geneIdentifiers: Array of Strings for investigation_by_genes (e.G.: uniprot:P10809,genesymbol:HSPD1,unigene:Hs.595053,refseq:NM_002156,entrez:3329)
  • value: String for investigation_by_characteristic_name, investigation_by_characteristic_value, investigation_by_characteristic and investigation_by_factor
  • relOperator: String for investigation_by_gene_and_value. Relational operator for pvalue, qvalue, FC. One of <below, above>.
Header Parameters Accept: application/json, subjectid:SECURITY-TOKEN
Media Type (input)
Results Investigation data as json
Media Type (output) application/json
Status code 200, 400, 401, 404

Get information from published investigations via predefined SPARQL queries. (e.G.: https://services.toxbank.net/investigation/sparql/investigations_and_protocols ) . You may also use camelcase notation for templatenames (e.G.: InvestigationsAndProtocols, InvestigationByFactors).

cURL example

curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" https://services.toxbank.net/investigation/sparql/investigation_and_characteristics
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=http://purl.obolibrary.org/obo/NEWT_4932" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=organism" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic_name
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=Saccharomyces cerevisiae (Baker's yeast)" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "values=http://purl.obolibrary.org/chebi/CHEBI:39867" https://services.toxbank.net/investigation/sparql/investigation_by_factor
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "factorValues=['http://purl.obolibrary.org/chebi/CHEBI:39867']" https://services.toxbank.net/investigation/sparql/investigation_by_factors
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=0.035" https://services.toxbank.net/investigation/sparql/investigation_by_foldchange
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" https://services.toxbank.net/investigation/sparql/investigation_by_genes
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" -d "relOperator=above" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=qvalue:0.805517" https://services.toxbank.net/investigation/sparql/investigation_by_value
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' https://services.toxbank.net/investigation/sparql/investigations_and_factors
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' https://services.toxbank.net/investigation/sparql/investigations_and_protocols
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' -d "factorValues=['http://purl.obolibrary.org/chebi/CHEBI:39867']" https://services.toxbank.net/investigation/sparql/protocols_by_factors
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