API Investigation:Sparql
From ToxBank API Wiki
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(update parameters and example for relational parameter in bio materials search (investigation_by_gene_and_value)) |
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* geneIdentifiers: Array of Strings for investigation_by_genes (e.G.: uniprot:P10809,genesymbol:HSPD1,unigene:Hs.595053,refseq:NM_002156,entrez:3329) | * geneIdentifiers: Array of Strings for investigation_by_genes (e.G.: uniprot:P10809,genesymbol:HSPD1,unigene:Hs.595053,refseq:NM_002156,entrez:3329) | ||
* value: String for investigation_by_characteristic_name, investigation_by_characteristic_value, investigation_by_characteristic and investigation_by_factor | * value: String for investigation_by_characteristic_name, investigation_by_characteristic_value, investigation_by_characteristic and investigation_by_factor | ||
+ | * relOperator: String for investigation_by_gene_and_value. Relational operator for pvalue, qvalue, FC. One of <below, above>. | ||
|REST_header_param=Accept: application/json, subjectid:SECURITY-TOKEN | |REST_header_param=Accept: application/json, subjectid:SECURITY-TOKEN | ||
|REST_op_result=Investigation data as json | |REST_op_result=Investigation data as json | ||
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curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value | curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value | ||
+ | |||
+ | curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" -d "relOperator=above" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value | ||
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value | curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value |
Revision as of 10:12, 11 December 2014
Description | Get information from investigations |
---|---|
Resource | Investigation |
Method | GET |
URI | investigation/sparql/{template_name} |
Parameters | params per template(template_name):
|
Header Parameters | Accept: application/json, subjectid:SECURITY-TOKEN |
Media Type (input) | |
Results | Investigation data as json |
Media Type (output) | application/json |
Status code | 200, 400, 401, 404 |
Get information from published investigations via predefined SPARQL queries. (e.G.: https://services.toxbank.net/investigation/sparql/investigations_and_protocols ) . You may also use camelcase notation for templatenames (e.G.: InvestigationsAndProtocols, InvestigationByFactors).
cURL example
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" https://services.toxbank.net/investigation/sparql/investigation_and_characteristics
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=http://purl.obolibrary.org/obo/NEWT_4932" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=organism" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic_name
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=Saccharomyces cerevisiae (Baker's yeast)" https://services.toxbank.net/investigation/sparql/investigation_by_characteristic_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "values=http://purl.obolibrary.org/chebi/CHEBI:39867" https://services.toxbank.net/investigation/sparql/investigation_by_factor
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "factorValues=['http://purl.obolibrary.org/chebi/CHEBI:39867']" https://services.toxbank.net/investigation/sparql/investigation_by_factors
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=0.035" https://services.toxbank.net/investigation/sparql/investigation_by_foldchange
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" https://services.toxbank.net/investigation/sparql/investigation_by_genes
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "geneIdentifiers=['uniprot:P10809','genesymbol:HSPD1','unigene:Hs.595053']" -d "value=pvalue:0.65614" -d "relOperator=above" https://services.toxbank.net/investigation/sparql/investigation_by_gene_and_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=FC:0.65614" https://services.toxbank.net/investigation/sparql/investigation_by_value
curl -X GET -k -H "Accept:application/json" -H "subjectid:MYTOKEN" -d "value=qvalue:0.805517" https://services.toxbank.net/investigation/sparql/investigation_by_value
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' https://services.toxbank.net/investigation/sparql/investigations_and_factors
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' https://services.toxbank.net/investigation/sparql/investigations_and_protocols
curl -X GET -k -H 'Accept:application/json' -H 'subjectid:MYTOKEN' -d "factorValues=['http://purl.obolibrary.org/chebi/CHEBI:39867']" https://services.toxbank.net/investigation/sparql/protocols_by_factors
Facts about API Investigation:SparqlRDF feed
Acts on | Investigation + |
Has output media type | application/json + |
Has status code | 200, 400, 401, 404 + |