API Investigation:Create

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(updated organisations and projects)
Line 9: Line 9:
 
* summarySearchable: true/false (default is false)
 
* summarySearchable: true/false (default is false)
 
required params (when upload not in isa-tab format):
 
required params (when upload not in isa-tab format):
−
* type: one of noData/unFormatedData/ftpData
+
* type: one of noData/unformattedData/ftpData
 
* title: string
 
* title: string
 
* abstract: string
 
* abstract: string
−
* owningOrg: one or multiple userservice-URIs (Organisations, Projects)
+
* owningOrg: one userservice-URI (Organisations)
 +
* owningPro: one or multiple userservice-URIs (Projects)
 
* authors: one or multiple userservice-URIs (User)
 
* authors: one or multiple userservice-URIs (User)
 
* keywords: one or multiple owl-URIs
 
* keywords: one or multiple owl-URIs
Line 19: Line 20:
 
|REST_op_mime_input=multipart/form-data:
 
|REST_op_mime_input=multipart/form-data:
 
* upload ISA-TAB files (isa-tab zip archive)
 
* upload ISA-TAB files (isa-tab zip archive)
−
* upload unformated data (zip archive, required params)
+
* upload unformatted data (zip archive, required params)
 
* upload without data (ftp filename, required params)
 
* upload without data (ftp filename, required params)
 
* upload without data (required params)
 
* upload without data (required params)
Line 30: Line 31:
 
  -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
 
  -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
  
−
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=noData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI1,GROUP_URI2" \  
+
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=noData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" \  
−
  -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" \
+
  -d owningPro=GROUP_URI1,GROUP_URI2" -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" \
−
-d "summarySearchable=VALUE" https://services.toxbank.net/investigation
+
-d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
  
 
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -F file="@ExampleFilename.zip;type=application/zip" \
 
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -F file="@ExampleFilename.zip;type=application/zip" \
−
  -d "type=unFormatedData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI1,GROUP_URI2" -d "authors=USER_URI1,USER_URI2" \
+
  -d "type=unformattedData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" -d owningPro=GROUP_URI1,GROUP_URI2" \
−
-d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" \
+
-d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" \
 
  -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
 
  -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
  
−
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=ftpData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI1,GROUP_URI2" \
+
  curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=ftpData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" \
−
  -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "ftpFile=FILENAME_A,FILENAME_B" -d "allowReadByUser=USER_URI1,USER_URI2" \
+
  -d owningPro=GROUP_URI1,GROUP_URI2" -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "ftpFile=FILENAME_A,FILENAME_B" \
−
-d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
+
-d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation

Revision as of 15:13, 16 May 2014

Description Create a new investigation from ISA-TAB files
Resource Investigation
Method POST
URI /investigation
Parameters optional params:
  • allowReadByUser: one or multiple userservice-URIs (User)
  • allowReadByGroup: one or multiple userservice-URIs (Organisations, Projects)
  • summarySearchable: true/false (default is false)

required params (when upload not in isa-tab format):

  • type: one of noData/unformattedData/ftpData
  • title: string
  • abstract: string
  • owningOrg: one userservice-URI (Organisations)
  • owningPro: one or multiple userservice-URIs (Projects)
  • authors: one or multiple userservice-URIs (User)
  • keywords: one or multiple owl-URIs
  • ftpFile: one or multiple filenames (only for type ftpData)
Header Parameters subjectid:SECURITY-TOKEN
Media Type (input) multipart/form-data:
  • upload ISA-TAB files (isa-tab zip archive)
  • upload unformatted data (zip archive, required params)
  • upload without data (ftp filename, required params)
  • upload without data (required params)
Results Task URI
Media Type (output) text/uri-list
Status code 202

cURL example 

curl -Lk -X POST -i -H "subjectid:MYTOKEN" -F file="@ExampleFilename.zip;type=application/zip" \
-d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation

curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=noData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" \ 
-d owningPro=GROUP_URI1,GROUP_URI2" -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" \
-d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation

curl -Lk -X POST -i -H "subjectid:MYTOKEN" -F file="@ExampleFilename.zip;type=application/zip" \
-d "type=unformattedData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" -d owningPro=GROUP_URI1,GROUP_URI2" \
-d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" \
-d "summarySearchable=VALUE" https://services.toxbank.net/investigation

curl -Lk -X POST -i -H "subjectid:MYTOKEN" -d "type=ftpData" -d "title=STRING" -d "abstract=STRING" -d "owningOrg=GROUP_URI" \
-d owningPro=GROUP_URI1,GROUP_URI2" -d "authors=USER_URI1,USER_URI2" -d "keywords=OWL_URI1,OWL_URI2" -d "ftpFile=FILENAME_A,FILENAME_B" \
-d "allowReadByUser=USER_URI1,USER_URI2" -d "allowReadByGroup=GROUP_URI1,GROUP_URI2" -d "summarySearchable=VALUE" https://services.toxbank.net/investigation
Retrieved from "http://api.toxbank.net/index.php/API_Investigation:Create"
Facts about API Investigation:CreateRDF feed
Acts onInvestigation  +
Has output media typetext/uri-list  +
Has status code202  +
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