API Extensions

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Most important: {{#ask: [[Category:REST_Resources]]}}.
 
Most important: {{#ask: [[Category:REST_Resources]]}}.
 
TBD - eventually add Investigation, as in ISA-TAB
 
  
 
[[http://api.toxbank.net/index.php/Category:REST_API All ToxBank extensions]]
 
[[http://api.toxbank.net/index.php/Category:REST_API All ToxBank extensions]]
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= Draft data model =
 
= Draft data model =
  
[[File:Overview.png]]
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The Toxbank resources are described in [http://www.w3.org/RDF/ RDF]. All resources, except Investigation/Study/Assay are described according to [https://github.com/ToxBank/toxbank-ontology/blob/master/api/Toxbank.owl Toxbank Ontology @GitHub].
  
[[File:Toxbank.owl]]
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The Investigation/Study/Assay resources reuse [http://isatab.sourceforge.net/ ISA-TAB] conventions. The RDF representation is defined by [https://github.com/ToxBank/isa2rdf converting ISA-TAB text files to RDF].
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[[File:Overview.png]]
  
 
= ToxBank System Functionalities =
 
= ToxBank System Functionalities =
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[[https://docs.google.com/leaf?id=1ao6Y7Tq2o9aN7_VSqVW7Ze9AiYfksUyNxgt7nP87CLT-YJsnjifcJeinBV0j&hl=en_US Paper prototype 3.0]]
 
[[https://docs.google.com/leaf?id=1ao6Y7Tq2o9aN7_VSqVW7Ze9AiYfksUyNxgt7nP87CLT-YJsnjifcJeinBV0j&hl=en_US Paper prototype 3.0]]
  
== PubMed search ==  
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== Downloads ==  
TBD
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[https://drive.google.com/?tab=mo&authuser=0#folders/0B55jmD17Vg55N2syaUdSYVAyd28 Customized ISACreator]
  
 
== Guidance ==
 
== Guidance ==
 
Static documents, video, etc.
 
Static documents, video, etc.

Latest revision as of 04:25, 11 May 2012

Contents

Overview

Overview of resources and operations defined in the OpenTox/ToxBank API.

New resources

Most important: Alert, Data, Index, Investigation, Organisation, Project, Protocol, Search, Session, Template, User.

[All ToxBank extensions]

Note 1

All time consuming operations (POST,PUT,DELETE) use OpenTox Task API, even if not explicitly specified.

Note 2

All operations are assumed to require a security token in the HTTP header "subjectid",as specified in OpenTox_API_1.2_A&A , even if not explicitly specified.

Draft data model

The Toxbank resources are described in RDF. All resources, except Investigation/Study/Assay are described according to Toxbank Ontology @GitHub.

The Investigation/Study/Assay resources reuse ISA-TAB conventions. The RDF representation is defined by converting ISA-TAB text files to RDF.

Overview.png

ToxBank System Functionalities

[Mapping]

[Paper prototype 3.0]

Downloads

Customized ISACreator

Guidance

Static documents, video, etc.

Personal tools