API Extensions

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= Draft data model =
 
= Draft data model =
  
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The Toxbank resources are described in [http://www.w3.org/RDF/ RDF]. All resources, except Investigation/Study/Assay are described according to [https://github.com/ToxBank/toxbank-ontology/blob/master/api/Toxbank.owl Toxbank Ontology @GitHub].
  
[https://github.com/ToxBank/toxbank-ontology/blob/master/api/Toxbank.owl Toxbank Ontology @GitHub]
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The Investigation/Study/Assay resources reuse [http://isatab.sourceforge.net/ ISA-TAB] conventions. The RDF representation is defined by [https://github.com/ToxBank/isa2rdf converting ISA-TAB text files to RDF].
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[[File:Overview.png]]
  
 
= ToxBank System Functionalities =
 
= ToxBank System Functionalities =

Revision as of 16:15, 14 December 2011

Contents

Overview

Overview of resources and operations defined in the OpenTox/ToxBank API.

New resources

Most important: Alert, Data, Index, Investigation, Organisation, Project, Protocol, Search, Session, Template, User.

[All ToxBank extensions]

Note 1

All time consuming operations (POST,PUT,DELETE) use OpenTox Task API, even if not explicitly specified.

Note 2

All operations are assumed to require a security token in the HTTP header "subjectid",as specified in OpenTox_API_1.2_A&A , even if not explicitly specified.

Draft data model

The Toxbank resources are described in RDF. All resources, except Investigation/Study/Assay are described according to Toxbank Ontology @GitHub.

The Investigation/Study/Assay resources reuse ISA-TAB conventions. The RDF representation is defined by converting ISA-TAB text files to RDF.

Overview.png

ToxBank System Functionalities

[Mapping]

[Paper prototype 3.0]

PubMed search

TBD

Guidance

Static documents, video, etc.

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