Data
From ToxBank API Wiki
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#[http://www3.imperial.ac.uk/bioinfsupport/resources/data_management/xperimentr XperimentR] | #[http://www3.imperial.ac.uk/bioinfsupport/resources/data_management/xperimentr XperimentR] | ||
## Built around ISA, has a notion of a Protocol and Application of a protocol to a Study | ## Built around ISA, has a notion of a Protocol and Application of a protocol to a Study | ||
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+ | == Standards == | ||
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+ | #[http://biosharing.org/standards Biosharing.org] |
Revision as of 11:32, 20 October 2011
Data |
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Contents |
Datasets
Datasets are considered to be generated by experiments (described by Study) and associated with Protocols via Assays container.
Dataset format / examples
- OpenTox_API_1.2_Dataset +
- modified OT datasets to include BioEntities
- other types of datasets
- [ISA-TAB]
- TG-GATES .cel files
- BioAssay ontology
All identified by URIs
Software
- BioInvestigationIndex web application
- SIMBioMS
- SyMBA
- SysMO-DB
- XperimentR
- Built around ISA, has a notion of a Protocol and Application of a protocol to a Study